Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_3100KEGG: rru:Rru_A3018 hypothetical protein. (70 aa)    
Predicted Functional Partners:
Bind_2287
PFAM: protein of unknown function DUF892; KEGG: xau:Xaut_3218 protein of unknown function DUF892.
  
  
 0.678
Bind_2984
PFAM: protein of unknown function DUF892; KEGG: azc:AZC_2285 hypothetical protein.
  
  
 0.678
Bind_0592
KEGG: ana:alr0587 unknown protein.
  
  
 0.499
Bind_3099
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.490
Bind_0126
KEGG: mex:Mext_4766 hypothetical protein.
   
  
 0.456
Bind_1692
PFAM: OsmC family protein; KEGG: acr:Acry_2755 OsmC family protein.
  
  
 0.454
Bind_0282
KEGG: rpa:RPA4634 hypothetical protein.
  
     0.406
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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