STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3107KEGG: bja:bll0688 hypothetical protein. (182 aa)    
Predicted Functional Partners:
Bind_0724
PFAM: protein of unknown function DUF983; KEGG: rle:RL1028 putative transmembrane protein.
  
     0.744
Bind_1611
PFAM: protein of unknown function DUF983; KEGG: smd:Smed_1973 protein of unknown function DUF983.
  
     0.719
Bind_1782
PFAM: protein of unknown function DUF1467; KEGG: bja:bsl4900 hypothetical protein.
  
     0.656
Bind_3324
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_0595 ATP-binding region ATPase domain protein.
  
     0.573
Bind_3024
PFAM: protein of unknown function DUF983; KEGG: pla:Plav_2829 protein of unknown function DUF983.
  
     0.572
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.558
Bind_0723
PFAM: Surfeit locus 1 family protein; KEGG: azc:AZC_2953 putative surfeit locus protein.
 
     0.543
Bind_1529
Transketolase central region; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
     0.430
Bind_3592
KEGG: mex:Mext_4396 hypothetical protein.
  
     0.429
Bind_2939
PFAM: conserved hypothetical protein; KEGG: mex:Mext_2126 hypothetical protein.
  
     0.422
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.