Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Bind_3113PFAM: Smr protein/MutS2; KEGG: rpc:RPC_0301 Smr protein/MutS2. (211 aa)    
Predicted Functional Partners:
Bind_3112
PFAM: MltA domain protein; 3D domain protein; KEGG: azc:AZC_4601 membrane-bound lytic murein transglycosylase.
       0.826
Bind_3114
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rle:RL0011 putative transcriptional regulator.
       0.826
Bind_3115
PFAM: protein of unknown function DUF1025; KEGG: mex:Mext_2340 protein of unknown function DUF1025.
       0.715
Bind_3111
PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_1560 import inner membrane translocase subunit Tim44.
 
     0.709
rpmC
PFAM: ribosomal protein L29; KEGG: mex:Mext_2170 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
   0.636
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
   0.593
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.593
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.592
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
   0.582
rpsU
PFAM: ribosomal protein S21; KEGG: nha:Nham_1233 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
    
   0.579
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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