Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_3131KEGG: bbt:BBta_3391 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Bind_3130
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: azc:AZC_3485 hypothetical protein.
 
  
 0.947
Bind_3129
KEGG: azc:AZC_3486 hypothetical protein.
 
  
 0.927
Bind_3128
PFAM: DoxX family protein; KEGG: azc:AZC_3487 DoxX family protein.
 
  
 0.909
Bind_1430
PFAM: protein of unknown function DUF692; KEGG: bxe:Bxe_B0587 hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.898
Bind_1431
KEGG: bxe:Bxe_B0585 hypothetical protein.
 
  
 0.860
Bind_1432
PFAM: DoxX family protein; KEGG: bxe:Bxe_B0584 hypothetical protein.
 
  
 0.825
Bind_3134
PFAM: protein of unknown function DUF1109; KEGG: rpe:RPE_1945 protein of unknown function DUF1109.
 
   
 0.660
Bind_3132
KEGG: azc:AZC_3484 hypothetical protein.
 
    
0.594
Bind_3133
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: azc:AZC_3483 sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.593
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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