STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3159TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: rpd:RPD_3569 hypothetical protein. (887 aa)    
Predicted Functional Partners:
Bind_3156
KEGG: mex:Mext_1944 squalene-hopene cyclase; TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase.
  
     0.774
Bind_3157
KEGG: bma:BMAA2099 hypothetical protein.
  
     0.774
Bind_3158
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM domain protein; KEGG: reh:H16_B2170 predicted Fe-S oxidoreductase.
  
     0.773
Bind_3152
TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: bxe:Bxe_B0022 hypothetical protein.
  
     0.760
Bind_3155
TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_1943 squalene-associated FAD-dependent desaturase.
  
     0.744
Bind_3154
TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: bpd:BURPS668_A3277 squalene/phytoene synthase family protein.
  
     0.658
Bind_3153
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: bja:blr3001 hypothetical protein.
  
     0.570
Bind_2156
PFAM: Carbohydrate-selective porin OprB; KEGG: zmo:ZMO0064 carbohydrate-selective porin.
  
     0.537
Bind_3558
PFAM: Carbohydrate-selective porin OprB; KEGG: zmo:ZMO0064 carbohydrate-selective porin.
  
     0.521
Bind_3430
KEGG: rpc:RPC_2525 TRAP transporter solute receptor, TAXI family.
  
     0.424
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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