Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Bind_3161PFAM: nuclease (SNase domain protein); KEGG: bja:blr0145 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Bind_3160
PFAM: peptidase M48 Ste24p; KEGG: azc:AZC_3720 putative peptidase M48 protein.
 
     0.861
Bind_0271
TolA protein; KEGG: bcs:BCAN_A1737 TolA protein.
 
  
 0.580
Bind_0927
KEGG: rpc:RPC_3143 hypothetical protein.
  
     0.564
Bind_0930
PFAM: protein of unknown function DUF1457; KEGG: mex:Mext_2259 protein of unknown function DUF1457.
  
     0.561
Bind_0148
KEGG: bbt:BBta_1138 hypothetical protein.
  
     0.552
Bind_1951
KEGG: mex:Mext_1100 conserved hypothetical protein.
  
     0.543
Bind_3249
PFAM: protein of unknown function DUF1465; KEGG: nwi:Nwi_2748 protein of unknown function DUF1465.
  
     0.534
Bind_0588
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mex:Mext_4432 ATP-binding region ATPase domain protein.
  
     0.522
Bind_0008
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.518
Bind_3592
KEGG: mex:Mext_4396 hypothetical protein.
  
     0.507
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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