Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3174Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mex:Mext_1487 helix-turn-helix domain protein. (92 aa)    
Predicted Functional Partners:
Bind_3176
KEGG: azc:AZC_4142 hypothetical protein.
 
     0.649
Bind_3175
KEGG: btr:Btr_0514 hypothetical protein.
 
     0.643
Bind_1680
KEGG: bbt:BBta_6628 hypothetical protein.
   
 
 0.541
Bind_2414
KEGG: rpc:RPC_3073 plasmid stabilization system.
   
 
 0.541
Bind_0140
PFAM: Ferritin Dps family protein; KEGG: gdi:GDI0826 ferritin-like protein; Belongs to the Dps family.
   
    0.478
Bind_2588
KEGG: xau:Xaut_1287 hypothetical protein.
  
     0.438
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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