STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3206PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: nar:Saro_3315 transport-associated. (313 aa)    
Predicted Functional Partners:
Bind_2246
PFAM: protein of unknown function DUF1328; KEGG: atc:AGR_L_805 hypothetical protein.
  
    0.690
Bind_2406
PFAM: protein of unknown function DUF1328; KEGG: mes:Meso_3110 protein of unknown function DUF1328.
  
    0.690
Bind_0240
PFAM: CsbD family protein; KEGG: bra:BRADO1086 conserved hypothetical protein, hypothetical UPF0337 protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.673
Bind_2288
PFAM: CsbD family protein; KEGG: rpa:RPA4217 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.673
Bind_0172
KEGG: mex:Mext_3817 hypothetical protein.
 
  
 0.616
Bind_1398
Putative phage repressor; PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: mes:Meso_1193 putative phage repressor.
  
     0.599
Bind_2216
KEGG: nar:Saro_3404 hypothetical protein.
  
     0.551
Bind_3384
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tbr:Tb10.70.3610 hypothetical protein.
 
    0.528
Bind_1910
PFAM: Peptidoglycan-binding LysM; KEGG: bbt:BBta_3954 hypothetical protein.
 
  
 0.507
Bind_3090
PFAM: HWE histidine kinase; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: mex:Mext_3300 PAS sensor protein.
  
     0.503
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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