STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3221PFAM: SCP-like extracellular; KEGG: xau:Xaut_2095 SCP-like extracellular. (169 aa)    
Predicted Functional Partners:
Bind_3222
PFAM: MscS Mechanosensitive ion channel; KEGG: mex:Mext_4833 MscS mechanosensitive ion channel.
       0.800
Bind_0978
TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: azc:AZC_4104 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
   0.726
Bind_3220
KEGG: oan:Oant_3315 L-2-amino-thiazoline-4-carboxylic acid hydrolase.
       0.636
Bind_0513
PFAM: protein of unknown function DUF1150; KEGG: xau:Xaut_2033 protein of unknown function DUF1150.
  
     0.602
Bind_2544
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.522
Bind_0628
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.512
Bind_1070
KEGG: rpd:RPD_0792 hypothetical protein.
 
     0.508
Bind_1873
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.504
Bind_0719
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: mex:Mext_2032 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
    0.490
Bind_0671
PFAM: NUDIX hydrolase; KEGG: bbt:BBta_6065 hypothetical protein.
 
  
 0.485
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.