Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Bind_3222PFAM: MscS Mechanosensitive ion channel; KEGG: mex:Mext_4833 MscS mechanosensitive ion channel. (866 aa)    
Predicted Functional Partners:
Bind_3221
PFAM: SCP-like extracellular; KEGG: xau:Xaut_2095 SCP-like extracellular.
       0.822
Bind_3220
KEGG: oan:Oant_3315 L-2-amino-thiazoline-4-carboxylic acid hydrolase.
       0.632
Bind_1178
PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: rle:pRL110232 putative transmembrane cyclic nucleotide-binding ion channel.
 
  
0.529
Bind_1239
PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cak:Caul_4668 sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.500
Bind_3347
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rru:Rru_A0654 multiple drug resistance protein MarC.
 
    0.495
Bind_3223
KEGG: sme:SMc00355 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.
       0.456
Bind_2252
KEGG: mlo:mll6900 hypothetical protein.
  
     0.434
Bind_3224
Lysine--tRNA ligase; PFAM: tRNA synthetase class II (D K and N); KEGG: sme:SMc00356 putative lysyl-tRNA synthetase protein.
       0.432
Bind_1880
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: smd:Smed_1240 multiple antibiotic resistance (MarC)-related protein.
  
    0.427
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: mex:Mext_0730 glycerol-3-phosphate dehydrogenase (NAD(P)(+)).
       0.427
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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