Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_3229PFAM: protein of unknown function DUF1428; KEGG: sal:Sala_0015 protein of unknown function DUF1428. (240 aa)    
Predicted Functional Partners:
Bind_3228
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rsh:Rsph17029_3841 3-demethylubiquinone-9 3-methyltransferase.
 
     0.795
Bind_3230
PFAM: helix-turn-helix HxlR type; KEGG: oan:Oant_2549 transcriptional regulator, HxlR family.
 
     0.650
Bind_3365
PFAM: AsmA family protein; KEGG: rpa:RPA4157 possible AsmA protein, assembly of outer membrane proteins.
   
    0.506
Bind_1623
PFAM: regulatory protein MarR; KEGG: nwi:Nwi_2885 transcriptional regulatory protein, MarR family.
 
     0.457
Bind_1687
PFAM: Exopolysaccharide synthesis ExoD; KEGG: rru:Rru_A2869 exopolysaccharide synthesis, ExoD.
  
     0.440
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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