STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3244PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bra:BRADO0281 putative short chain dehydrogenase/reductase family member; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (262 aa)    
Predicted Functional Partners:
Bind_1276
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: atc:AGR_pAT_564 short chain dehydrogenase.
 
 
   0.712
Bind_2783
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5828 short-chain dehydrogenase/reductase SDR.
 
 
   0.661
Bind_1456
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr7057 putative oxidoreductase.
  
 
   0.654
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.639
Bind_2090
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMb20210 putative oxidoreductase protein.
  
 
   0.638
Bind_3245
PFAM: protein of unknown function DUF1332; KEGG: bbt:BBta_0275 hypothetical protein.
       0.617
Bind_2906
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bms:BR0700 short chain dehydrogenase.
  
 
   0.479
Bind_3246
Hypothetical protein.
       0.466
Bind_3243
PFAM: glutamine amidotransferase class-I; KEGG: bra:BRADO0280 glutamine amidotransferase.
       0.437
Bind_1113
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mex:Mext_1947 beta-ketoacyl synthase.
  
 
 0.435
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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