Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_3253PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA3835 hypothetical protein. (460 aa)    
Predicted Functional Partners:
Bind_3252
Hypothetical protein.
       0.773
Bind_3655
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: bja:bll6875 flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.653
Bind_2416
KEGG: rpe:RPE_3533 hypothetical protein.
  
     0.645
Bind_0137
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20.
 
     0.567
Bind_3406
KEGG: mex:Mext_2511 hypothetical protein.
  
     0.535
Bind_1439
KEGG: bra:BRADO6401 hypothetical protein.
  
     0.481
Bind_2798
PFAM: peptidase S1 and S6 chymotrypsin/Hap; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4942 hypothetical protein; putative CbxX/CfqX family protein (N-term) and peptidase (C-term).
   
 0.449
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
  
     0.440
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
  
   0.433
Bind_3147
PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_0845 GCN5-related N-acetyltransferase.
  
     0.428
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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