Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3263PFAM: Secreted repeat of unknown function; KEGG: tbd:Tbd_1655 probable transmembrane protein. (126 aa)    
Predicted Functional Partners:
Bind_1105
Putative transmembrane anti-sigma factor; KEGG: bbr:BB1303 hypothetical protein.
 
     0.682
Bind_3265
PFAM: protein of unknown function DUF323; KEGG: pla:Plav_2198 protein of unknown function DUF323.
 
     0.659
Bind_3264
KEGG: pla:Plav_2197 hypothetical protein.
       0.613
Bind_1104
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mex:Mext_0228 RNA polymerase sigma factor, sigma-70 family.
 
     0.546
Bind_3262
KEGG: mex:Mext_3140 hypothetical protein.
       0.522
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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