Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3281PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cak:Caul_2638 protein of unknown function DUF404. (834 aa)    
Predicted Functional Partners:
Bind_3280
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpa:RPA3752 transglutaminase-like domain.
 
  
 0.976
Bind_3051
PFAM: protein of unknown function DUF403; KEGG: bra:BRADO2904 hypothetical protein.
 
    0.909
Bind_2470
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rpa:RPA3754 transglutaminase-like domain.
 
  
 0.898
Bind_2469
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cak:Caul_2635 transglutaminase domain protein.
 
  
 0.878
Bind_0886
PFAM: transglutaminase domain protein; KEGG: rle:RL1406 putative transglutaminase family protein.
 
  
 0.854
Bind_3052
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpd:RPD_2240 protein of unknown function DUF404.
 
   
0.682
Bind_3282
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: aae:aq_061 molybdenum cofactor biosynthesis MOG.
       0.666
Bind_3279
KEGG: bra:BRADO0926 hypothetical protein containing two histidine-rich domains; putative signal peptide.
       0.412
Bind_0382
TIGRFAM: DNA ligase D; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: mes:Meso_1150 ATP dependent DNA ligase.
  
    0.400
Bind_2225
TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; KEGG: bra:BRADO5823 ATP-dependent DNA ligase.
  
    0.400
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.