Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_3341PFAM: cyclase family protein; KEGG: art:Arth_3556 cyclase family protein. (287 aa)    
Predicted Functional Partners:
Bind_3342
TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: spe:Spro_3095 succinic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.779
Bind_2265
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region.
  
    0.483
Bind_2945
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pfo:Pfl_3712 cupin region.
  
    0.483
Bind_3343
KEGG: rpc:RPC_0801 hypothetical protein.
       0.474
Bind_3344
PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_6939 hypothetical protein.
       0.474
Bind_3340
PFAM: aldo/keto reductase; KEGG: mex:Mext_3852 aldo/keto reductase.
       0.470
Bind_0600
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.424
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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