Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3362PFAM: protein of unknown function DUF423; KEGG: mlo:mll8379 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Bind_0513
PFAM: protein of unknown function DUF1150; KEGG: xau:Xaut_2033 protein of unknown function DUF1150.
  
     0.763
Bind_0880
KEGG: azc:AZC_2357 hypothetical protein.
  
     0.753
Bind_2171
KEGG: mlo:mll5084 hypothetical protein.
  
     0.753
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
  
     0.746
Bind_0715
PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein.
  
     0.742
Bind_0671
PFAM: NUDIX hydrolase; KEGG: bbt:BBta_6065 hypothetical protein.
 
     0.741
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
 
     0.734
Bind_1211
KEGG: rpc:RPC_3310 hypothetical protein.
  
     0.732
Bind_2193
PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_3384 invasion associated locus B family protein.
  
     0.726
Bind_2407
KEGG: azc:AZC_1593 hypothetical protein.
  
     0.720
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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