Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3374PFAM: protein of unknown function DUF847; KEGG: mlo:mlr8547 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Bind_3372
Hypothetical protein.
       0.779
Bind_3373
KEGG: lbl:LBL_0298 lipoprotein releasing system, LolE permease component.
       0.779
Bind_3375
Hypothetical protein.
       0.592
Bind_3371
Hypothetical protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
       0.484
Bind_1022
KEGG: azc:AZC_1080 hypothetical protein.
  
     0.472
Bind_2073
PFAM: TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family.
  
     0.438
Bind_0732
KEGG: azc:AZC_4244 hypothetical protein.
  
     0.436
Bind_3376
Hypothetical protein.
       0.432
Bind_3214
KEGG: rpb:RPB_3326 hypothetical protein.
  
     0.430
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
     0.429
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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