STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3382KEGG: mex:Mext_2051 ubiquinol-cytochrome c chaperone. (201 aa)    
Predicted Functional Partners:
Bind_3381
KEGG: xau:Xaut_4383 hypothetical protein.
 
     0.694
Bind_1724
KEGG: nwi:Nwi_1435 hypothetical protein.
  
     0.597
Bind_0724
PFAM: protein of unknown function DUF983; KEGG: rle:RL1028 putative transmembrane protein.
  
     0.567
Bind_1642
PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator.
  
     0.565
Bind_3114
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rle:RL0011 putative transcriptional regulator.
  
     0.563
atpF2
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity).
  
     0.527
Bind_1611
PFAM: protein of unknown function DUF983; KEGG: smd:Smed_1973 protein of unknown function DUF983.
  
     0.527
Bind_1951
KEGG: mex:Mext_1100 conserved hypothetical protein.
  
     0.525
Bind_0114
PFAM: glycosyl transferase group 1; KEGG: bja:bll8163 glycosyl transferase.
  
     0.490
Bind_3383
PFAM: SmpA/OmlA domain protein; KEGG: rpa:RPA2737 hypothetical protein.
 
     0.490
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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