Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3406KEGG: mex:Mext_2511 hypothetical protein. (48 aa)    
Predicted Functional Partners:
xerD
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.801
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.752
Bind_3021
PFAM: transcription activator effector binding; KEGG: bra:BRADO0382 conserved hypothetical protein; putative secreted protein.
  
     0.749
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.745
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
  
     0.744
Bind_1633
KEGG: mex:Mext_0926 hypothetical protein.
  
     0.743
Bind_0880
KEGG: azc:AZC_2357 hypothetical protein.
  
     0.737
Bind_3559
KEGG: mex:Mext_1590 conserved hypothetical protein.
  
     0.718
Bind_0013
KEGG: mex:Mext_2985 hypothetical protein.
  
     0.699
Bind_1107
KEGG: mex:Mext_4294 hypothetical protein.
  
     0.672
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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