Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_3414KEGG: gbe:GbCGDNIH1_1127 hypothetical protein. (379 aa)    
Predicted Functional Partners:
Bind_3415
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mex:Mext_2677 mandelate racemase/muconate lactonizing protein.
       0.625
Bind_2513
KEGG: mpt:Mpe_A0156 hypothetical protein.
  
     0.516
Bind_1993
PFAM: regulatory protein LuxR; KEGG: rpb:RPB_2794 transcriptional regulator, LuxR family.
  
     0.511
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.500
Bind_1991
PFAM: regulatory protein LuxR; KEGG: rle:pRL100454 putative transcriptional regulator.
  
     0.460
Bind_1992
PFAM: regulatory protein LuxR; KEGG: bur:Bcep18194_B1619 transcriptional regulator, LuxR family.
  
     0.458
Bind_0806
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_2186 putative ATPase.
  
     0.428
Bind_0118
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.425
Bind_3661
KEGG: gdi:GDI0639 hypothetical protein.
  
     0.425
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.408
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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