STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3444PFAM: NUDIX hydrolase; KEGG: nha:Nham_3259 NUDIX hydrolase. (179 aa)    
Predicted Functional Partners:
Bind_0872
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: rpe:RPE_2325 transglutaminase family protein cysteine peptidase, BTLCP.
  
     0.714
Bind_1070
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.702
Bind_0268
KEGG: nwi:Nwi_0527 hypothetical protein.
  
     0.689
Bind_3249
PFAM: protein of unknown function DUF1465; KEGG: nwi:Nwi_2748 protein of unknown function DUF1465.
  
     0.688
Bind_0924
KEGG: mes:Meso_1118 hypothetical protein.
 
    0.685
Bind_3233
PFAM: protein of unknown function DUF1036; KEGG: azc:AZC_0444 hypothetical protein.
  
     0.674
Bind_0715
PFAM: conserved hypothetical protein; KEGG: mex:Mext_4300 hypothetical protein.
 
     0.670
Bind_3592
KEGG: mex:Mext_4396 hypothetical protein.
  
     0.660
Bind_1632
PFAM: protein of unknown function DUF1214; KEGG: nha:Nham_1402 protein of unknown function DUF1214.
  
     0.659
Bind_1173
KEGG: mex:Mext_4307 hypothetical protein.
  
     0.646
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.