Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3500PFAM: protein of unknown function DUF140; KEGG: nha:Nham_1921 protein of unknown function DUF140. (376 aa)    
Predicted Functional Partners:
Bind_3499
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_2214 ATP-binding component of ABC transporter.
 
 0.998
Bind_3669
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_0892 ABC transporter related.
 
 0.993
Bind_3670
PFAM: Mammalian cell entry related domain protein; KEGG: mex:Mext_0893 mammalian cell entry related domain protein.
 
 0.993
Bind_3498
PFAM: Mammalian cell entry related domain protein; KEGG: nha:Nham_1923 mammalian cell entry related.
 
 
 0.989
Bind_3668
PFAM: protein of unknown function DUF140; KEGG: mex:Mext_0891 protein of unknown function DUF140.
  
  
 
0.907
Bind_3621
KEGG: acr:Acry_2706 hypothetical protein.
   
 
 0.796
Bind_3671
PFAM: protein of unknown function DUF330; KEGG: mex:Mext_0894 protein of unknown function DUF330.
 
  
 0.713
Bind_0568
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_3926 putative ABC transporter ATP-binding protein in NtrA/RpoN 5'region.
 
  
  0.586
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.518
Bind_0651
PFAM: permease YjgP/YjgQ family protein; KEGG: mex:Mext_3649 permease YjgP/YjgQ family protein.
   
 
 0.461
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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