Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
vapC-3PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (151 aa)    
Predicted Functional Partners:
Bind_3527
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
   0.829
Bind_2538
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
   0.810
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.772
Bind_2796
KEGG: bxe:Bxe_B1881 plasmid stability protein.
 
 
 
 0.731
Bind_3611
PFAM: PilT protein domain protein; KEGG: rso:RSc3055 hypothetical protein.
  
   
 0.532
Bind_1043
KEGG: rpc:RPC_0821 transcriptional modulator of MazE/toxin, MazF.
 
   
 0.436
Bind_3610
Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: aav:Aave_0579 transcriptional regulator/antitoxin, MazE.
 
   
 0.413
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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