Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_3536PFAM: protein of unknown function DUF526; KEGG: mlo:mll2675 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Bind_0773
KEGG: atc:AGR_C_3716 hypothetical protein.
  
     0.654
Bind_3533
PFAM: protein of unknown function DUF152; KEGG: rpd:RPD_3877 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
 
     0.640
Bind_3537
Hypothetical protein.
       0.613
Bind_3232
PFAM: N-formylglutamate amidohydrolase; KEGG: mex:Mext_2748 N-formylglutamate amidohydrolase.
  
     0.604
Bind_3534
PFAM: protein of unknown function DUF185; KEGG: azc:AZC_3983 hypothetical protein.
       0.591
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.591
Bind_3343
KEGG: rpc:RPC_0801 hypothetical protein.
  
     0.519
yacG
Protein of unknown function DUF329; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
  
     0.498
Bind_3344
PFAM: OmpA/MotB domain protein; KEGG: bbt:BBta_6939 hypothetical protein.
  
     0.464
Bind_1259
PFAM: Protein of unknown function DUF1790; KEGG: mex:Mext_3770 protein of unknown function DUF1790.
 
     0.446
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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