Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_3586KEGG: mex:Mext_0694 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Bind_3585
KEGG: bja:bll6847 hypothetical protein.
 
   
 0.968
Bind_3587
KEGG: ret:RHE_CH00689 hypothetical protein.
 
   
 0.934
Bind_3555
Flagellar hook-associated 3 family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   
 0.816
Bind_3554
PFAM: flagellar FlaF family protein; KEGG: mes:Meso_0276 flagellar FlaF.
 
     0.814
Bind_3553
PFAM: flagellar FlbT family protein; KEGG: bja:bll6854 flagellar biosynthesis repressor FlbT.
 
     0.802
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: bja:bll6857 flagellar hook-associated protein FlgK.
 
     0.793
Bind_3648
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
   
 0.778
Bind_2686
KEGG: mex:Mext_0632 putative chemotaxis protein precursor.
 
     0.777
Bind_3650
KEGG: rpc:RPC_1100 hypothetical protein.
  
     0.774
Bind_3652
Flagellar basal body P-ring biosynthesis protein-like protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
     0.749
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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