STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_3600Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: har:HEAR2244 aromatic amino acid aminotransferase. (407 aa)    
Predicted Functional Partners:
Bind_3356
PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: bja:bll1421 prephenate dehydratase.
    
 0.941
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: xau:Xaut_0394 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.921
Bind_0308
PFAM: Prephenate dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: xau:Xaut_0393 arogenate dehydrogenase.
    
 0.921
Bind_0079
PFAM: aminotransferase class I and II; KEGG: oan:Oant_1672 aminotransferase class I and II.
   
 0.920
Bind_1123
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.917
Bind_1062
PFAM: S-adenosylmethionine synthetase; KEGG: azc:AZC_0014 S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family.
     
 0.910
Bind_1524
PFAM: aminotransferase class IV; KEGG: mes:Meso_1614 aminotransferase, class IV.
     
 0.910
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.909
Bind_1316
PFAM: GCN5-related N-acetyltransferase; KEGG: oan:Oant_2212 GCN5-related N-acetyltransferase.
    
  0.900
Bind_2364
PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH02834 probable acetyltransferase protein.
    
  0.900
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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