STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427445_00752Unannotated protein. (315 aa)    
Predicted Functional Partners:
GCA_000427445_01257
Unannotated protein.
  
     0.661
GCA_000427445_02717
Unannotated protein.
   
 
 0.645
GCA_000427445_00259
Unannotated protein.
  
     0.644
GCA_000427445_02821
Unannotated protein.
    
  0.572
GCA_000427445_00976
Unannotated protein.
    
 
 0.533
GCA_000427445_00753
Unannotated protein.
       0.475
GCA_000427445_00997
Unannotated protein.
   
 
  0.432
GCA_000427445_00444
Unannotated protein.
    
   0.416
GCA_000427445_00445
Unannotated protein.
    
   0.416
Your Current Organism:
Methylocapsa acidiphila
NCBI taxonomy Id: 395964
Other names: M. acidiphila B2, Methylocapsa acidiphila B2, Methylocapsa acidiphila str. B2, Methylocapsa acidiphila strain B2, eubacterial strain B2, methanotroph B2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.