STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427445_00775Unannotated protein. (424 aa)    
Predicted Functional Partners:
GCA_000427445_00776
Unannotated protein.
       0.806
GCA_000427445_00777
Unannotated protein.
       0.605
GCA_000427445_03392
Unannotated protein.
 
  
 0.527
GCA_000427445_01347
Unannotated protein.
 
   
 0.486
GCA_000427445_01304
Unannotated protein.
   
    0.481
GCA_000427445_00835
Unannotated protein.
   
  
 0.472
GCA_000427445_02967
Unannotated protein.
 
    0.459
GCA_000427445_01169
Unannotated protein.
  
  
 0.450
GCA_000427445_00193
Unannotated protein.
 
    0.448
GCA_000427445_01492
Unannotated protein.
  
  
 0.441
Your Current Organism:
Methylocapsa acidiphila
NCBI taxonomy Id: 395964
Other names: M. acidiphila B2, Methylocapsa acidiphila B2, Methylocapsa acidiphila str. B2, Methylocapsa acidiphila strain B2, eubacterial strain B2, methanotroph B2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.