STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427445_03720Unannotated protein. (773 aa)    
Predicted Functional Partners:
GCA_000427445_03695
Unannotated protein.
 
      0.813
GCA_000427445_03638
Unannotated protein.
  
  
  0.713
GCA_000427445_01629
Unannotated protein.
  
  
  0.694
GCA_000427445_02372
Unannotated protein.
  
  
  0.686
GCA_000427445_03454
Unannotated protein.
     
 0.667
GCA_000427445_01234
Unannotated protein.
     
 0.657
GCA_000427445_00904
Unannotated protein.
   
   0.624
GCA_000427445_01685
Unannotated protein.
   
   0.624
GCA_000427445_02391
Unannotated protein.
   
   0.624
GCA_000427445_03237
Unannotated protein.
   
   0.624
Your Current Organism:
Methylocapsa acidiphila
NCBI taxonomy Id: 395964
Other names: M. acidiphila B2, Methylocapsa acidiphila B2, Methylocapsa acidiphila str. B2, Methylocapsa acidiphila strain B2, eubacterial strain B2, methanotroph B2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.