Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Msil_0045PFAM: flagellar FlaF family protein; KEGG: bid:Bind_3554 flagellar FlaF family protein. (115 aa)    
Predicted Functional Partners:
Msil_0046
PFAM: flagellar FlbT family protein; KEGG: bid:Bind_3553 flagellar FlbT family protein.
 
  
 0.997
Msil_0034
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.979
Msil_0043
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: bid:Bind_3556 flagellar hook-associated protein FlgK.
 
  
 0.961
Msil_0044
Flagellar hook-associated 3 family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.961
Msil_0052
KEGG: bid:Bind_3587 hypothetical protein.
 
    0.890
Msil_0024
KEGG: bid:Bind_3656 flagellar basal body rod protein FlgB.
 
  
 0.874
Msil_0037
PFAM: OmpA/MotB domain protein; KEGG: bid:Bind_2687 OmpA/MotB domain protein.
 
  
 0.868
Msil_0042
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: bid:Bind_3557 flagellar basal body FlaE domain protein.
 
  
 0.867
Msil_0028
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
  
 0.866
Msil_1655
PFAM: protein of unknown function DUF1217; KEGG: bid:Bind_2809 protein of unknown function DUF1217.
 
    0.865
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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