Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_0101SMART: regulatory protein ArsR; KEGG: rpa:RPA2256 ArsR family transcriptional regulator ArsR1. (114 aa)    
Predicted Functional Partners:
Msil_0102
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: nwi:Nwi_3125 arsenate reductase.
 
   
 0.827
Msil_0104
TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: nha:Nham_4428 NADPH-dependent FMN reductase.
 
   
 0.801
Msil_0103
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: rpc:RPC_0616 bile acid:sodium symporter.
 
  
 0.786
Msil_0100
TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bid:Bind_1245 NAD(P)H quinone oxidoreductase, PIG3 family.
       0.625
Msil_0099
PFAM: protein of unknown function DUF81; KEGG: bbt:BBta_4771 hypothetical protein.
     
 0.577
Msil_1572
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bid:Bind_2679 heavy metal translocating P-type ATPase.
  
  
 0.415
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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