STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0133PFAM: CreA family protein; KEGG: bid:Bind_3676 CreA family protein. (176 aa)    
Predicted Functional Partners:
Msil_0132
KEGG: bid:Bind_3675 hypothetical protein.
 
     0.572
Msil_3808
KEGG: bid:Bind_1070 hypothetical protein.
  
     0.475
Msil_2345
Phasin; TIGRFAM: phasin; PFAM: Phasin 2 family protein; KEGG: met:M446_2947 phasin.
  
     0.454
Msil_2281
KEGG: bid:Bind_3469 hypothetical protein.
  
     0.425
Msil_3296
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: bid:Bind_0450 peptidase U6 penicillin-insensitive murein endopeptidase.
  
     0.414
Msil_1373
PFAM: protein of unknown function DUF1150; KEGG: bid:Bind_0513 protein of unknown function DUF1150.
  
     0.402
Msil_3428
KEGG: bja:bll3735 putative outer-membrane immunogenic protein precursor.
  
     0.400
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.