Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Msil_0219PFAM: phosphoesterase PA-phosphatase related; KEGG: prw:PsycPRwf_0979 phosphoesterase, PA-phosphatase related. (219 aa)    
Predicted Functional Partners:
Msil_1247
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_0846 amino acid adenylation domain protein.
     
 0.578
Msil_0240
KEGG: mag:amb2967 hypothetical protein.
  
     0.570
Msil_0197
KEGG: bid:Bind_0852 major facilitator superfamily MFS_1.
   
 0.564
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.537
Msil_2723
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bid:Bind_1113 beta-ketoacyl synthase.
  
 
 0.519
Msil_0362
Capsular exopolysaccharide family; KEGG: bid:Bind_1135 lipopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.504
Msil_0934
PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0590 glycosyl transferase group 1.
 
    0.490
Msil_0731
PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein.
  
 0.430
Msil_1926
PFAM: cytochrome P450; KEGG: bid:Bind_0833 cytochrome P450.
  
 0.430
Msil_1418
PFAM: transcriptional regulator domain protein; KEGG: met:M446_5608 transcriptional regulator, CadC.
  
    0.417
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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