Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_0240KEGG: mag:amb2967 hypothetical protein. (1851 aa)    
Predicted Functional Partners:
Msil_0241
PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: mag:amb2966 large extracellular alpha-helical protein.
 
     0.934
Msil_0242
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: mag:amb2965 membrane carboxypeptidase/penicillin-binding protein PbpC.
 
     0.907
Msil_0897
KEGG: bid:Bind_2301 hypothetical protein.
  
     0.741
Msil_0934
PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0590 glycosyl transferase group 1.
  
     0.734
Msil_0936
KEGG: bid:Bind_0592 hypothetical protein.
  
     0.716
Msil_0243
PFAM: short chain fatty acid transporter; KEGG: mpo:Mpop_2304 short chain fatty acid transporter.
       0.649
Msil_2088
KEGG: bid:Bind_2076 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.641
Msil_1093
PFAM: DNA/RNA non-specific endonuclease; KEGG: bbt:BBta_5484 hypothetical protein; Belongs to the peptidase S1B family.
  
     0.627
Msil_2497
KEGG: bra:BRADO3269 hypothetical protein.
  
     0.622
Msil_0937
PFAM: permease YjgP/YjgQ family protein; KEGG: bid:Bind_0593 permease-like protein.
  
     0.615
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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