Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_0260KEGG: bid:Bind_1072 putative mRNA 3-end processing factor. (344 aa)    
Predicted Functional Partners:
Msil_2916
PFAM: protein of unknown function DUF29; KEGG: acr:Acry_3636 protein of unknown function DUF29.
   
 0.876
Msil_0263
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: bid:Bind_0372 DEAD/H associated domain protein.
 
    0.866
Msil_0264
KEGG: bid:Bind_0373 hypothetical protein.
 
     0.862
Msil_1758
KEGG: nha:Nham_0836 hypothetical protein.
    
 0.827
Msil_3020
SMART: WD-40 repeat protein; KEGG: bid:Bind_3116 WD-40 repeat protein.
    
 0.827
Msil_3103
TIGRFAM: DNA polymerase LigD, ligase domain protein; PFAM: ATP dependent DNA ligase; KEGG: smd:Smed_1305 DNA polymerase LigD ligase region.
 
 
 0.751
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.718
Msil_1736
TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: xau:Xaut_4365 ATP-dependent DNA ligase.
 
 
 0.715
Msil_3391
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: scl:sce2182 naringenin-chalcone synthase.
    
 0.637
Msil_0261
KEGG: bid:Bind_1073 hypothetical protein.
       0.596
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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