Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0280PFAM: ribonuclease BN; KEGG: bid:Bind_3250 ribonuclease BN. (288 aa)    
Predicted Functional Partners:
Msil_1373
PFAM: protein of unknown function DUF1150; KEGG: bid:Bind_0513 protein of unknown function DUF1150.
  
     0.645
Msil_0279
PFAM: protein of unknown function DUF195; KEGG: bid:Bind_3251 protein of unknown function DUF195.
       0.540
Msil_1006
KEGG: bja:bll7051 hypothetical protein.
  
   
 0.532
Msil_3828
PFAM: Invasion associated locus B family protein; KEGG: bid:Bind_2193 invasion associated locus B family protein.
  
     0.516
Msil_0156
PFAM: protein of unknown function DUF1239; KEGG: bid:Bind_0571 protein of unknown function DUF1239.
  
     0.496
Msil_0890
Porin; PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: bid:Bind_2294 porin.
  
     0.496
Msil_0980
KEGG: bid:Bind_0671 NUDIX hydrolase.
 
     0.495
Msil_1594
KEGG: bid:Bind_0659 putative exported protein of unknown function.
  
     0.486
Msil_0074
PFAM: alpha/beta hydrolase fold; KEGG: bid:Bind_0925 alpha/beta hydrolase fold.
  
     0.485
Msil_0889
Porin; PFAM: porin; KEGG: bid:Bind_2294 porin.
  
     0.476
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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