Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Msil_0291PFAM: Extracellular ligand-binding receptor; KEGG: bid:Bind_3284 extracellular ligand-binding receptor. (403 aa)    
Predicted Functional Partners:
Msil_0065
PFAM: inner-membrane translocator; KEGG: met:M446_2269 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.663
Msil_2082
PFAM: inner-membrane translocator; KEGG: mrd:Mrad2831_2250 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.616
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
   0.582
Msil_0066
PFAM: inner-membrane translocator; KEGG: met:M446_2270 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.572
Msil_2005
TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: dra:DR_A0322 UreA/short chain-amide ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.560
Msil_2006
PFAM: inner-membrane translocator; KEGG: dra:DR_A0321 UreA/short-chain amide ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.527
Msil_1227
KEGG: bid:Bind_3484 hypothetical protein.
  
     0.520
Msil_2081
PFAM: inner-membrane translocator; KEGG: mrd:Mrad2831_2249 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.513
Msil_1361
SMART: nuclease (SNase domain protein); KEGG: bid:Bind_3161 nuclease (SNase domain protein).
  
     0.494
Msil_0329
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.473
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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