Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0306PFAM: protein of unknown function DUF1109; KEGG: rpe:RPE_1945 protein of unknown function DUF1109. (210 aa)    
Predicted Functional Partners:
Msil_0305
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rpb:RPB_3555 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.949
Msil_0301
PFAM: DoxX family protein; KEGG: bid:Bind_3128 DoxX family protein.
 
   
 0.824
Msil_0304
KEGG: bid:Bind_3131 hypothetical protein.
 
   
 0.801
Msil_0302
KEGG: azc:AZC_3486 hypothetical protein.
 
   
 0.758
Msil_0303
PFAM: protein of unknown function DUF692; KEGG: azc:AZC_3485 hypothetical protein; Belongs to the UPF0276 family.
 
   
 0.664
Msil_2374
KEGG: bja:bll3605 hypothetical protein.
  
     0.523
Msil_3693
KEGG: bbt:BBta_3397 hypothetical protein.
 
   
 0.461
Msil_3694
PFAM: protein of unknown function DUF692; KEGG: bbt:BBta_3398 hypothetical protein; Belongs to the UPF0276 family.
 
   
 0.401
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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