Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0334KEGG: bid:Bind_0228 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Msil_0332
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bid:Bind_0229 two component transcriptional regulator, winged helix family.
 
     0.529
Msil_0333
TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: xau:Xaut_0048 DNA binding domain-containing protein.
       0.501
Msil_3815
KEGG: bid:Bind_0051 hypothetical protein.
  
     0.452
Msil_2270
PFAM: protein of unknown function DUF1355; KEGG: bid:Bind_3475 hypothetical protein.
  
     0.441
Msil_1235
PFAM: N-formylglutamate amidohydrolase; KEGG: bid:Bind_3643 N-formylglutamate amidohydrolase.
  
     0.433
Msil_2892
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bid:Bind_1061 transcriptional regulator, XRE family.
  
     0.403
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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