Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0374PFAM: YdjC family protein; KEGG: bid:Bind_1647 YdjC family protein. (311 aa)    
Predicted Functional Partners:
Msil_0375
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_1222 short-chain dehydrogenase/reductase SDR.
       0.763
Msil_0373
PFAM: glycosyl transferase family 2; KEGG: bid:Bind_1650 glycosyl transferase family 2.
 
  
 0.587
Msil_0376
PFAM: manganese containing catalase; KEGG: bid:Bind_0288 manganese containing catalase.
       0.452
Msil_2814
PFAM: GtrA family protein; KEGG: met:M446_3397 GtrA family protein.
 
     0.451
Msil_0075
KEGG: bid:Bind_0927 hypothetical protein.
  
     0.442
Msil_0937
PFAM: permease YjgP/YjgQ family protein; KEGG: bid:Bind_0593 permease-like protein.
  
     0.437
Msil_1851
PFAM: transcription activator effector binding; KEGG: bid:Bind_3021 transcription activator effector binding.
  
     0.423
Msil_1388
KEGG: bid:Bind_3214 hypothetical protein.
  
     0.417
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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