Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_0490PFAM: NMT1/THI5 like domain protein; KEGG: bja:bll2634 hypothetical protein. (355 aa)    
Predicted Functional Partners:
Msil_1164
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bid:Bind_1091 binding-protein-dependent transport systems inner membrane component.
  
   0.585
Msil_0768
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO0532 putative sulfonate ABC transporter, permease protein (SsuC/YcbM-like).
 
 
 0.578
Msil_2448
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpo:Mpop_4265 binding-protein-dependent transport systems inner membrane component.
 
 
 0.568
Msil_0772
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1398 probable permease of ABC transporter.
 
 
 0.555
Msil_0491
KEGG: nfa:nfa29350 hypothetical protein.
  
    0.532
Msil_2672
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpt:Rpal_2687 binding-protein-dependent transport systems inner membrane component.
 
 
 0.516
Msil_1163
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll1293 ATP-binding protein of ABC transporter.
 
 
 0.511
Msil_2835
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_0309 binding-protein-dependent transport systems inner membrane component.
  
 
 0.454
Msil_2602
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_4398 putative ABC-type nitrate/sulfonate/bicarbonate transport permease.
  
   0.448
Msil_0014
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr6201 ABC transporter ATP-binding protein.
  
 
 0.428
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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