Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0622KEGG: scl:sce6240 hypothetical protein. (287 aa)    
Predicted Functional Partners:
Msil_0210
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bid:Bind_2470 transglutaminase domain protein.
  
     0.568
Msil_3818
PFAM: transglutaminase domain protein; KEGG: scl:sce0813 transglutaminase-like enzymes, putative cysteine proteases.
  
     0.538
Msil_1568
PFAM: transglutaminase domain protein; KEGG: bid:Bind_3823 transglutaminase domain protein.
  
     0.536
Msil_3166
PFAM: transglutaminase domain protein; KEGG: mex:Mext_2618 transglutaminase domain protein.
  
     0.526
Msil_0621
KEGG: bid:Bind_1194 cytochrome c oxidase subunit I.
  
    0.454
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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