Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_0655KEGG: bid:Bind_3382 ubiquinol-cytochrome c chaperone. (175 aa)    
Predicted Functional Partners:
Msil_0654
PFAM: protein of unknown function DUF177; KEGG: bid:Bind_3381 hypothetical protein.
 
     0.902
Msil_0656
PFAM: SmpA/OmlA domain protein; KEGG: bid:Bind_3383 SmpA/OmlA domain protein.
 
     0.707
Msil_0763
KEGG: bid:Bind_2318 hypothetical protein.
  
     0.667
Msil_1249
PFAM: protein of unknown function DUF983; KEGG: bid:Bind_0724 protein of unknown function DUF983.
  
     0.592
Msil_1673
PFAM: ROSMUCR transcriptional regulator; KEGG: bid:Bind_1642 transcriptional regulator, MucR family.
  
     0.567
Msil_1689
KEGG: bid:Bind_1724 hypothetical protein.
  
     0.548
Msil_0423
PFAM: response regulator receiver; KEGG: bid:Bind_1212 response regulator receiver protein.
  
     0.539
Msil_0667
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: bid:Bind_0588 histidine kinase.
  
     0.525
Msil_3543
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: bid:Bind_1121 transcriptional regulator, ArsR family.
  
     0.522
fabH
3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.510
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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