Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Msil_0680KEGG: bid:Bind_1329 hypothetical protein. (267 aa)    
Predicted Functional Partners:
mobA
Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
       0.563
Msil_2154
KEGG: bid:Bind_3386 hypothetical protein.
  
     0.515
Msil_3058
KEGG: bid:Bind_2724 conserved hypothetical protein, putative phage associated protein.
 
     0.515
Msil_0681
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; KEGG: bid:Bind_1328 HAD-superfamily hydrolase, subfamily IIA.
 
     0.497
Msil_2088
KEGG: bid:Bind_2076 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.490
Msil_1316
PFAM: fatty acid hydroxylase; KEGG: bid:Bind_2044 fatty acid hydroxylase.
  
     0.469
Msil_2335
PFAM: diacylglycerol kinase catalytic region; KEGG: ccr:CC_3555 hypothetical protein.
  
     0.449
Msil_3054
KEGG: bid:Bind_2728 hypothetical protein.
 
     0.449
Msil_0936
KEGG: bid:Bind_0592 hypothetical protein.
  
     0.447
Msil_1304
Hypothetical protein; KEGG: met:M446_0887 patatin.
  
     0.440
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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