STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0752KEGG: rpd:RPD_3060 hypothetical protein. (237 aa)    
Predicted Functional Partners:
Msil_0751
PFAM: heat shock protein DnaJ domain protein; KEGG: bid:Bind_1671 heat shock protein DnaJ domain protein.
     0.942
Msil_3891
PFAM: heat shock protein DnaJ domain protein; KEGG: noc:Noc_2148 heat shock protein DnaJ-like.
 
     0.750
Msil_0753
PFAM: Glutathione S-transferase domain; KEGG: bid:Bind_1672 glutathione S-transferase domain.
       0.629
Msil_0754
PFAM: protein of unknown function DUF599; KEGG: met:M446_1810 protein of unknown function DUF599.
       0.440
Msil_3165
PFAM: cytochrome c class I; KEGG: rpd:RPD_2197 cytochrome c, class I.
  
     0.409
Msil_3667
KEGG: xau:Xaut_0467 major facilitator transporter.
  
     0.401
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.