Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0785PFAM: protein of unknown function DUF58; KEGG: bid:Bind_2843 protein of unknown function DUF58. (318 aa)    
Predicted Functional Partners:
Msil_0786
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bid:Bind_2844 ATPase associated with various cellular activities AAA_3.
  
 0.966
Msil_2270
PFAM: protein of unknown function DUF1355; KEGG: bid:Bind_3475 hypothetical protein.
 
     0.827
Msil_3815
KEGG: bid:Bind_0051 hypothetical protein.
  
   
 0.772
Msil_0787
PFAM: protein of unknown function DUF1285; KEGG: bja:blr2466 hypothetical protein.
 
     0.733
Msil_0788
PFAM: NUDIX hydrolase; KEGG: met:M446_4477 NUDIX hydrolase.
       0.655
Msil_0790
PFAM: Polynucleotide adenylyltransferase region; KEGG: bid:Bind_2846 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.639
Msil_0789
KEGG: met:M446_4476 hypothetical protein.
       0.626
Msil_2892
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bid:Bind_1061 transcriptional regulator, XRE family.
  
     0.604
Msil_2472
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: met:M446_1383 ATPase associated with various cellular activities AAA_3.
  
 0.571
Msil_1117
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_0857 tetratricopeptide TPR_2 repeat protein.
 
    0.533
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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