Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msil_0791KEGG: atc:AGR_C_4086 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Msil_1666
KEGG: met:M446_4209 hypothetical protein.
  
     0.720
Msil_2527
KEGG: bid:Bind_3039 hypothetical protein.
  
     0.604
Msil_1664
KEGG: bid:Bind_1633 hypothetical protein.
  
     0.576
Msil_3880
PFAM: protein of unknown function DUF459; KEGG: bid:Bind_3055 protein of unknown function DUF459.
  
     0.573
Msil_1087
KEGG: bid:Bind_1107 hypothetical protein.
  
     0.566
Msil_3428
KEGG: bja:bll3735 putative outer-membrane immunogenic protein precursor.
  
     0.533
Msil_1877
KEGG: rpb:RPB_3730 SpoVT/AbrB-like.
  
     0.523
Msil_3300
PFAM: AsmA family protein; KEGG: bid:Bind_3365 AsmA family protein.
  
     0.519
Msil_0156
PFAM: protein of unknown function DUF1239; KEGG: bid:Bind_0571 protein of unknown function DUF1239.
  
     0.515
Msil_0790
PFAM: Polynucleotide adenylyltransferase region; KEGG: bid:Bind_2846 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.513
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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