Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_0812Fe2+/Zn2+ uptake regulation protein-like protein; KEGG: bid:Bind_3010 putative ferric uptake regulator, Fur family; Belongs to the Fur family. (167 aa)    
Predicted Functional Partners:
Msil_1310
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bid:Bind_0178 ABC transporter related.
  
  
 0.537
Msil_1311
PFAM: ABC-3 protein; KEGG: bid:Bind_0179 ABC-3 protein.
  
  
 0.517
Msil_0810
PFAM: Patatin; KEGG: bid:Bind_3008 patatin.
       0.515
Msil_0811
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bid:Bind_3009 3-hydroxybutyrate dehydrogenase.
       0.501
Msil_1661
PFAM: protein of unknown function UPF0153; KEGG: rpb:RPB_3505 hypothetical protein; Belongs to the UPF0260 family.
  
     0.452
Msil_1875
PFAM: CoA-binding domain protein; KEGG: mex:Mext_2489 CoA-binding domain protein.
  
    0.428
Msil_3507
Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
  
   
 0.417
Msil_2570
PFAM: regulatory protein ArsR; KEGG: aav:Aave_4718 transcriptional regulator, ArsR family.
  
  
 0.414
Msil_0971
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bid:Bind_2430 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
  
 0.403
Msil_2647
Peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bra:BRADO3235 thioredoxin peroxidase (AhpC, alkyl hydroperoxide reductase).
  
  
 0.403
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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