Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Msil_0826TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: bid:Bind_0235 TonB-system energizer ExbB. (348 aa)    
Predicted Functional Partners:
Msil_0825
TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: azc:AZC_1259 TonB system transport protein.
 
 
 0.982
Msil_0824
TIGRFAM: TonB family protein; KEGG: bid:Bind_0233 TonB family protein.
 
 
 0.950
Msil_0922
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bid:Bind_0272 biopolymer transport protein ExbD/TolR.
 
 
 0.895
Msil_3136
TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bid:Bind_0527 protein TolR.
 
 
 0.895
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.797
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.666
Msil_2667
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bid:Bind_3062 biopolymer transport protein ExbD/TolR.
 
 
 0.616
Msil_2668
TIGRFAM: TonB family protein; KEGG: bid:Bind_3063 TonB family protein.
 
 
 0.584
Msil_0613
TIGRFAM: TonB family protein; protein TolA; PFAM: Gram-negative tonB protein; Tol-Pal system TolA; KEGG: bid:Bind_2937 TonB family protein.
  
 
 0.555
Msil_0700
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: bid:Bind_1796 lipoprotein releasing system, transmembrane protein, LolC/E family.
 
   
 0.546
Your Current Organism:
Methylocella silvestris
NCBI taxonomy Id: 395965
Other names: M. silvestris BL2, Methylocella silvestris BL2, Methylocella silvestris str. BL2, Methylocella silvestris strain BL2, Methylocella sp. BL2
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